Genomic Analysis Pipeline: Automate data preprocessing, variant calling, and annotation with Snakemake. Ensure reproducibility and reliability in genomic studies.
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Updated
May 3, 2024 - HTML
Genomic Analysis Pipeline: Automate data preprocessing, variant calling, and annotation with Snakemake. Ensure reproducibility and reliability in genomic studies.
A collection of scripts for filtering annotated variant call format files
HgvsGo is a program designed for analyzing "c." and "p." HGVS (Human Genome Variation Society) notations for single nucleotide variations (SNVs) and small insertions/deletions (indels) after variant calling. It serves as an alternative to tools like snpEff and VEP.
Highly Open Workflow for Annotation & Ranking toward genomic variant Discovery
A tool to import SnpEff annotated files to a Neo4j Graph database
Snakemake workflow designed to annotate VCF files withe SnpEff / SniSift
Generate an interactive HTML-based report from M.tb SnpEff annotated VCF(s)
Multi-bAse Codon-Associated variant Re-annotatiON (MACARON)
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