Snakemake workflow: vcf-annotate-snpeff-snpsift

This is the Snakemake workflow for VCF annotaion, powered by SnpEff and SnpSift for annotation, using dbSNFP, MSigDb and GWAS Catalog databases. VCF statistics are aggregated by MultiQC.

Each tool and databases belong to their authors.

See [wiki] for more information.

Name		Name	Last commit message	Last commit date
Latest commit History 82 Commits
.github/workflows		.github/workflows
.igr/profile		.igr/profile
envs		envs
report		report
rules		rules
schemas		schemas
scripts		scripts
tests		tests
.gitattributes		.gitattributes
.gitignore		.gitignore
LICENSE		LICENSE
Makefile		Makefile
README.md		README.md
Snakefile		Snakefile
config.yaml		config.yaml
design.tsv		design.tsv
run.sh		run.sh
vcf-annotate-snpeff-snpsift.py		vcf-annotate-snpeff-snpsift.py
workflow.png		workflow.png

tdayris-perso/vcf-annotate-snpeff-snpsift