BANKSY: spatial clustering
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Updated
May 15, 2024 - R
BANKSY: spatial clustering
A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) assays.
A Julia package for single cell and spatial data analysis
A Julia package for single cell and spatial data analysis
Pipeline to generate Molecular Pixelation data with Pixelator (Pixelgen Technologies AB)
PhD thesis written in Quarto.
NicheNet: predict active ligand-target links between interacting cells
One single-cell pipeline to rule them all, one pipeline to find them, one pipeline to unify them all, and with the data bind them.
LIANA x Tensor-cell2cell Protocols
Analysing single-cell and DSP data to test the effect of copper chelation with TEPA in Neuroblastoma mice
Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effect and can be used for debarcoding or population discovery.
Github repository for nanoSPLITS manuscript data and R scripts
Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
Simulating single-cell data using gene regulatory networks 📠
Factorial latent dynamic models trained on Markovian simulations of biological processes using single cell RNA sequencing data.
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
RNA velocity is a high-dimensional vector that predicts the future state of individual cells on a timescale of hours.
Custom codes for Flysta3D paper.
Cell cluster Analysis with Variational Autoencoder using Conditional Hierarchy Of latent representioN
Python code for cross-condition label refinement in single-cell data with HiDDEN
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