Pinned

1. cy2path cy2path Public

   Factorial latent dynamic models trained on Markovian simulations of biological processes using single cell RNA sequencing data.

   Python 1

2. cytopath cytopath Public

   Simulation based inference of differentiation trajectories from RNA velocity fields.

   Python 10 4

3. insilico_sequence_design insilico_sequence_design Public

   Moduating gene expression via in-silico mutagenesis

   Python

4. EngreitzLab/gene_network_evaluation EngreitzLab/gene_network_evaluation Public

   Evaluation framework for computationally inferred gene networks from single-cell data.

   Jupyter Notebook 7 6

5. scDIBS scDIBS Public

   Dynamical Integration of BatcheS

   Python