MERlin is an extensible analysis pipeline applied to decoding MERFISH data
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Updated
Sep 21, 2021 - Python
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merfish
Here are 6 public repositories matching this topic...
A Julia package for single cell and spatial data analysis
bioinformatics
data-viz
scrna-seq
starmap
julia-package
single-cell-omics
spatial-transcriptomics
scatac-seq
merfish
visium
seqfish
xenium
cartana
slideseq
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Updated
May 14, 2024 - Julia
Single cell ATAC and RNA seq data analysis
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Updated
Apr 17, 2024 - Jupyter Notebook
A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and covariation patterns between interacted cell types.
scrna-seq
scrna-seq-data
scrnaseq
nico
scrna-seq-analysis
spatial-transcriptomics
niche-modelling
merfish
seqfish
niche-covariation
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Updated
Apr 30, 2024 - Jupyter Notebook
A snakemake pipeline to perform cell segmentation on MERFISH spatial transcriptomics data.
cell-segmentation
watershed-algorithm
single-cell-rna-seq
spatial-transcriptomics
merfish
cellpose
vizgen
vizgen-postprocessing
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Updated
Nov 22, 2023 - Python
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