A Calculator for Easy Estimation of Coverage with shRNA, CRISPR, and cDNA libraries
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Updated
Jan 8, 2019 - C++
A Calculator for Easy Estimation of Coverage with shRNA, CRISPR, and cDNA libraries
Environment to practice Bioinformatics
My Key Story presentation for Auckland Research Bazaar 2020
The purpose of optimization is to achieve the “best” design relative to a set of prioritized criteria or constraints. These include maximizing factors such as productivity, strength, reliability, longevity, efficiency, and utilization. This decision-making process is known as optimization. This repository discusses some of the matchematical tech…
Documents and scripts for analysis of oligonucleotide synthesis errors.
Build Docker container for RseQC and (optionally) convert to Apptainer/Singularity.
Build Docker container for Picard Tools and (optionally) convert to Apptainer/Singularity.
🧬 Python utilities for working with nucleotide sequence strings.
Base librarys for sequencing data analysis.
Convenient handling of FASTA-encoded files for the Go language
R functions for querying Sean Davis' omicidx system
Generate number ranges
Assisted download of selected samples from GISAID
Sequence Alignment tool
Generic tools to support parsing gtf/gff files and identifying overlapping genomic regions
A project to sequence the RNA from actual error prone reads from a PCR process and then to analyze the sequenced protein sequence
Sequence Alignment tool
Analyses of amplicon-sequencing of the ANXA2 gene as published in Fassel et al., Blood (2021)
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