Pinned

1. jetson_nanopore_sequencing jetson_nanopore_sequencing Public

   A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.

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2. guppy_parameter_optimiser guppy_parameter_optimiser Public

   A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate

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3. illumina450k_filtering illumina450k_filtering Public

   A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays

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4. a collection of my notes while worki... a collection of my notes while working on nanopore basecalling on the Jetson Xavier

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   # Jetson Xavier basecalling notes

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   ## initial basecalling runs 

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   #### 'fast' flip-flop calling on the Jetson Xavier

5. diagnostics_exome_reporting diagnostics_exome_reporting Public

   Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.

   Shell 13 10

6. WES_ShinyDiscover WES_ShinyDiscover Public

   A Shiny interface to filter and identify variants of interest from whole exome data

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