Scripts accompanying manuscript "The genomic basis of reproductive and migratory behaviour in a polymorphic salmonid"
-
Updated
Sep 20, 2022 - R
Scripts accompanying manuscript "The genomic basis of reproductive and migratory behaviour in a polymorphic salmonid"
Python client for the CAX API. Holmes, E. E and M. Williams. 2023. pycax: a Python client for the Coordinated Assessments data exchange REST API
Bioc2022 workshop. SEESAW: Statistical Estimation Of Allelic Expression Using Salmon And Swish
Jupyter notebooks for DGE results and ontology analysis and visualisation.
Population genetics using microsatellites for different salmonid species
Simple Nextflow RNA-Seq pipeline
An R package for hosting data & code, and for running the Dam Impact Analysis (DIA) developed by Nieland et al. (2015)
Count your fastq-formatted rna-seq reads with Salmon
A JavaScript toolset for interacting with the OStatus suite of protocols (JS port of tootsuite/ostatus2)
Code, data, and figures for an experimental pathogen exposure study using wood frogs and American bullfrogs
A general run reconstruction model for the commercial sockeye salmon fishery in Bristol Bay, Alaska. This model leverages information from age and genetic composition samples to apportion mixed-stock catches and account for interception among terminal fishing districts.
Fulfills a data request to estimate sport fish harvest in the Upper Cook Inlet Exclusive Economic Zone.
Add a description, image, and links to the salmon topic page so that developers can more easily learn about it.
To associate your repository with the salmon topic, visit your repo's landing page and select "manage topics."