RNA-seq replication analysis.
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Updated
May 24, 2024 - R
RNA-seq replication analysis.
Snakemake pipeline for alternative slicing analysis with VAST-TOOLS
A python package for working with inputs to and outputs from the toil-rnaseq pipeline
These are tutorials on a subset of tools available for processing raw RNAseq data. This if for HISAT2_SAMtools_Stringtie_gffcompare_ballgown pipeline or HISAT2_SAMtools_Stringtie_PrepDEanalysis.py_DESeq2 pipeline
Snakemake workflow for Salmon quantification and FastQC quality controls
In this repository : i have created RNAseq pipeline using snakemake rules
This Repository contains various Flowcharts, Visual and Graphical representations which are all created for educational purposes
Pipeline for calling and analyzing variants from RNA-Seq data
Simple Snakemake RNA-Seq pipeline
EuroBioc2020 SPEAQeasy workshop https://eurobioc2020.bioconductor.org by Nick Eagles and Josh Stolz. For more information about SPEAQeasy check http://research.libd.org/SPEAQeasy/. For an example on how to use this RNA-seq processing pipeline and analyze the output files check http://research.libd.org/SPEAQeasy-example/.
Snakemake+singularity RNAseq processing pipeline
A basic pipeline for the analysis of RNASeq data. Entirely done in Bash and R script.
pilot pipeline that includes tool containerization
A book that discusses topics and contains tutorials relevant to population genomics
Introduction to Bioinformatics workflows with Nextflow
These snakefiles are prepared for the snakemake pipeline for the RNASeq analysis
circs_snake : a snakemake-based circRNA detection workflow
A script to analyze with DESeq2 data from Kallisto. You maybe are interested only in DESeq2 part and its analisis and representation :)
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