rnaseq_pipeline

Snakemake scripts and associated resources for processing RNAseq data.

This script in particular is designed to handle data generated from KAPA Hyperprep RNA-seq libraries sequenced on Illumina Nextseq/Novaseq sequencers.

Name		Name	Last commit message	Last commit date
Latest commit History 75 Commits
STAR		STAR
bbmap		bbmap
fastqc		fastqc
rnaseq_tools		rnaseq_tools
snakemake		snakemake
subread		subread
.bashrc		.bashrc
.gitignore		.gitignore
.gitlab-ci.yml		.gitlab-ci.yml
LICENSE		LICENSE
README.md		README.md
Snakefile		Snakefile
circle.yml		circle.yml
cluster.json		cluster.json
config.yaml		config.yaml
environment.yml		environment.yml
run_nextflow.job		run_nextflow.job
run_snakemake.job		run_snakemake.job
star_pipeline.svg		star_pipeline.svg

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milescsmith/rnaseq_pipeline

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