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326 Open 471 Closed
326 Open 471 Closed
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Issues list

Orphan recovery option in rare cases causes Salmon to quit abruptly without error
#929 opened May 3, 2024 by gringer
No bug - How to explain Salmon workflow simply ? (avoid mathematics-heavy explanation)
#926 opened Apr 16, 2024 by deekshamisri
Counts in ONT data
#924 opened Apr 15, 2024 by lubitelpospat
Segmentation core dumped - Salmon quant
#923 opened Apr 9, 2024 by rugilemat
gene body coverage
#922 opened Apr 2, 2024 by wangjiawen2013
transcript with very small EffectiveLength
#921 opened Mar 22, 2024 by steven-bioinfo
Issues about using salmon quant on multiple bam files
#920 opened Mar 21, 2024 by ShaowenJ
4
index error
#919 opened Mar 18, 2024 by JXAUDZF
3
Difference between the genome browser view of BAM produced by STAR and the result of Salmon
#918 opened Mar 16, 2024 by NJU-Bio-Info
Salmon installation problem
#915 opened Mar 10, 2024 by bioinfolabmu
3
Error running salmon
#914 opened Feb 28, 2024 by bali-eng
rapidjson internal assertion failure: IsObject()
#913 opened Feb 21, 2024 by AndreaGhiroldi
Configure error installing salmon
#912 opened Feb 19, 2024 by jmbono
1
Precompiled asset missing for version 1.10.1
#911 opened Jan 30, 2024 by paulmenzel
salmon quantmerge skipped the nucleotide IDs that have multiple sequences - Metagenome dataset
#910 opened Jan 30, 2024 by jiazhou0116
2
icu version conflict with libboost
#909 opened Jan 30, 2024 by JustinYeon
After using SAMtools to convert bam to fastq, the salmon quantification mapping rate is super low: is it normal?
#908 opened Jan 27, 2024 by KOBE24DUNK
Only 50% reads aligned on PE human mRNA stranded library
#905 opened Jan 24, 2024 by cecile2429
Please make gencode SA files available
#904 opened Dec 25, 2023 by Rfriedmancolumbia
Quantification in Alignment mode for Nanopore Data
#903 opened Dec 8, 2023 by Harshangda
2
segmentation fault when skipQuant flag is set
#902 opened Nov 30, 2023 by aydemiro
View salmon quant output in a browser
#900 opened Nov 14, 2023 by steven-bioinfo
Salmon quant error in --ont mode (Bus error (core dumped)
#898 opened Nov 4, 2023 by rugilemat
Hi @Ray6283,
#890 opened Oct 17, 2023 by Ray6283
1
(alevin) Specifying --read-geometry in paired-end samples
#886 opened Oct 14, 2023 by yyoshiaki
ProTip! no:milestone will show everything without a milestone.