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26 Open 46 Closed
26 Open 46 Closed
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Issues list

problem with minfreq
#74 opened Feb 12, 2024 by wantingwei
5
No snps problems
#71 opened Jul 11, 2023 by NiklausMikaelson12138
4
VCF has no header
#70 opened Jul 7, 2023 by NiklausMikaelson12138
Using SNPGenie on VCF from RAD-seq
#68 opened Apr 20, 2023 by AudeCaizergues
1
Need help to determine method for inference of convergent evolution
#66 opened Jan 30, 2023 by qianxuans
1
GTF file does not contain any sense (+) strand products
#65 opened Oct 3, 2022 by dferran1
12
How to join the output for a whole genome analysis
#64 opened Sep 26, 2022 by pabloangulo7
5
SNP genie
#59 opened May 7, 2022 by Ravy-LFL
What is the best option?
#57 opened Apr 8, 2022 by glaudelrio
1
Negative values for mean_gdiv_polymorphic
#56 opened Feb 4, 2022 by peterdfields
1
triplet error for spliced proteins
#55 opened Aug 30, 2021 by hrrsjeong
2
unsure how SNPgenie does the polarization of mutations
#54 opened Aug 9, 2021 by mufernando
1
sliding_window script requires different headers than between_group output file generates
#52 opened May 24, 2021 by passdan
4
NONREF_NONPOLY and population_summary.txt empty
#51 opened May 19, 2021 by nicolo-tellini
2
pi cluster within-pool
#50 opened May 13, 2021 by aspitaleri
11
Question about calculating pi within a window
#48 opened May 10, 2021 by deborahmleigh
21
gtf -strand convert to + strand
#45 opened Apr 22, 2021 by zlc289
2
analysing within-host diversity
#44 opened Mar 12, 2021 by aspitaleri
12
WARNING: AD must list numbers
#42 opened Feb 15, 2021 by ireneIta
6
mid-sequence STOP codon in the sequence
#41 opened Jan 2, 2021 by jsan4christ
1
SNPgenie for one bacterial strain
#40 opened Nov 9, 2020 by SolayMane
1
Advice on multi-sample, multi-species, multi-contig analyses for both πN/πS and dN/dS
#39 opened Aug 16, 2020 by andreaswallberg
4
specify genetic code?
#38 opened Aug 11, 2020 by nathanerank
3
snpgenie\_within\_group.pl: Question about input file formats
#37 opened Aug 7, 2020 by annasimonsen
2
error in running the SNPGenie
#36 opened Jul 16, 2020 by shiyi-pan
16
ProTip! Follow long discussions with comments:>50.