Bacterial plasmid annotation pipeline
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Updated
Mar 21, 2024 - Python
Bacterial plasmid annotation pipeline
Master thesis in molecular biology at the University of Basel.
An unofficial API for Addgene, the open-source plasmid repository.
Tool to find mge (phages, plasmids, and transposons) in cdiff. Scripts that allow Clostyper to be run in slurm.
Screen plasmids for carbapenemase resistance genes, and classify using MOB Suite
A Python based server for making Gibson cloning a little faster
A simple python plasmid map creator
An ensemble of plasmid classification tools
Software to identify known plasmid sequence from metagenomic assembly using Minhash
Plasmid assembly, gene identification and annotation pipeline
Software to identify plasmid sequence data from metagenome using logistic regression and Minhash
Modular cloning simulation with the MoClo framework in Python
a DNA assembly library
A Go package for designing DNA.
QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources
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