AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.
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Updated
May 8, 2024 - C++
AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.
A resistome profiler for Graphing Resistance Out Of meTagenomes
(Meta-)genome screening for functional and natural product gene sequences
Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasmid visualization.
ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Database
ARG normalization by mapping to the ARO ontology.
Desktop tool for microbial genome annotation and gene detection
Python package to interact with the PATRIC database (https://www.patricbrc.org)
Curation of Antibiotic Resistance Genes by using crowdsourcing
PRAWNS: A fast and scalable bioinformatics tool that generates an efficient pan-genome representation of closely related whole genomes to provide a concise list of genomic features
Extract discriminatory ARGs from metagenomics samples
Interpretable genotype-to-phenotype models with rule-based classifiers
Antibiotic discovery using graph deep learning, with Chemprop.
Visualise your isolate's antibiotic resistance profile
Active surveillance of newly-admitted nursing home patients for colonization of antibiotic-resistant bacteria reveals that multiple lineages have spread across southeast Michigan healthcare networks.
A simple package for simulations of microbial growth experiments with realistic sources of error.
A tool for AMR gene family prediction, simple and ML-based
Natural language processing chatbot answering questions about antibiotics and antibiotic resistance
An educational simple game in Italian/English that simulates interaction between antbiotics and bacteria.
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