Bacterial plasmid annotation pipeline
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Updated
Mar 21, 2024 - Python
Bacterial plasmid annotation pipeline
Master thesis in molecular biology at the University of Basel.
Software to identify known plasmid sequence from metagenomic assembly using Minhash
A Go package for designing DNA.
An unofficial API for Addgene, the open-source plasmid repository.
A Python based server for making Gibson cloning a little faster
Tool to find mge (phages, plasmids, and transposons) in cdiff. Scripts that allow Clostyper to be run in slurm.
A simple python plasmid map creator
Screen plasmids for carbapenemase resistance genes, and classify using MOB Suite
Modular cloning simulation with the MoClo framework in Python
An ensemble of plasmid classification tools
a DNA assembly library
Software to identify plasmid sequence data from metagenome using logistic regression and Minhash
Plasmid assembly, gene identification and annotation pipeline
QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources
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