Modular, Scalable Phenomic Data Processing Pipelines
-
Updated
May 30, 2024 - Python
Modular, Scalable Phenomic Data Processing Pipelines
Computation of root phenes from 3D point clouds.
A phenotyping pipeline for Python
PhD thesis written in Quarto.
Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.
This is a public repository for relevant code from the publication of the same name.
This is repository of my bachelor degree graduation work. Method was developed in purpose to upgrade accuracy and efficiency of wheat spikelets detection on images.
Phenotype comparison tools using semantic similarity.
Explore the phenome ✨🎆✨
phenol: Phenotype ontology library
The QC software for the OWL version of HPO (only text-checks, not so much logic included)
Standardise and share computable disease definitions
Focusing the GWAS Lens on days to flower using latent variable phenotypes derived from global multi-environment trials. The Plant Genome. (2022) e20269.
Internationalisation of the HPO content
Code used to generate TERRA REF data in BrAPI format for use by the Agricultural Research Data Network (ARDN) and publication at the USDA National Agriculture Library
Scaleable multitask Network
LI Detector analytical pipeline for colony-based high-throughput screens.
Automatic estimation of storage root length, diameter and volume.
Code used to generate Genomes to Fields data in BrAPI format from Imagebreed for use by the Agricultural Research Data Network (ARDN)
Add a description, image, and links to the phenomics topic page so that developers can more easily learn about it.
To associate your repository with the phenomics topic, visit your repo's landing page and select "manage topics."