Sequence-to-graph mapper and graph generator

Pan-genome wide association studies

Pan-genomic sequence analysis

A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline

SOPanG, a simple tool for pattern matching over an elastic-degenerate string, a recently proposed simplified model for the pan-genome.

Rules to run Roary or PanPhlAn to build pangenome using Snakemake

Reference-free FASTQ filter for rare germline and somatic variants

OrthoSLC: A pipeline to get Orthologous Genes using Reciprocal Best Blast Hit (RBBH) Single Linkage Clustering, indenpendent of relational database management system

Pangea: The Pan-Genome Analysis Pipeline

panicmage can estimate gene gain and loss rates, the size of pan-genomes, and test for neutral evolution.

Pan-genomics of metagenome-assembled genomes suffers from fragmentation and incompleteness

microbial pan-genome analysis

Pangenomic Statistical analysis in R (pasaR)

The experiments performed in State-of-the-art structural variant calling: What went conceptually wrong and how to fix it?

戊糖乳杆菌泛基因组分析 | Pan-genome analysis of Lactobacillus Pentosus

probability emitting pangenome graphs

Building Pan-Genomes based on Sequence Homology (BPG-SH) constructs and analyzes pan-genomes from multiple organisms. By leveraging sequence homology, BPG-SH integrates genomes to form a comprehensive pan-genome, enhancing our understanding of genetic diversity and evolution.