Assembly and intrahost/low-frequency variant calling for viral samples
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Updated
May 8, 2024 - Nextflow
Assembly and intrahost/low-frequency variant calling for viral samples
Fast and accurate de novo assembler for long reads
Nanopore sequence read simulator
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
PEPPER-Margin-DeepVariant
Long read based human genomic structural variation detection with cuteSV
CLI tool for flexible and fast adaptive sampling on ONT sequencers
Technology agnostic long read analysis pipeline for transcriptomes
Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
⛏ HLA predictions from NGS shotgun data
Predict plasmids from uncorrected long read data
A versatile compressor of third generation sequencing reads.
A Python library to visualize and analyze long-read transcriptomes
A pipeline for high-quality bacterial genome construction using ONT sequencing
Nanopore data analysis in R
Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
Isocomp provides tools to compare any number of transcriptome assemblies (GTF + fasta) from long read RNAseq
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