Pipeline for polymap and QTL Mapping

RNA-Seq pipeline

MEGA ATAC-seq Workflow implementation

scripts associated with yam genome assembly

How to channel sequencing reads from multiple subdirectories into nextflow pipeline

Variant calling pipeline for Pacbio Hifi reads

command line and desktop tool for microbial variant calling

Protein Analysis and Classifier Toolkit

AllMine, a flexible pipeline for Allele Mining. Develloped at INRA's GAFL unit :

Code and scripts used for Worth et al. 2022: "Receptor editing constrains development of phosphatidyl choline-specific B cells in VH12-transgenic mice".

main Repository for my Master's Thesis work

These scripts were used to bioinformatically process the NGS data associated with the manuscript entitled "Illuminating the bacterial microbiome of Australian ticks from companion animals with next-generation sequencing", authored by Telleasha L. Greay, Kimberly L. Evasco, Megan L. Evans, Paola Magni, Una M. Ryan and Peter J. Irwin. The raw data…

PhyProbe is a bioinformatic pipeline designed to extract phylogenetic loci from Next-Generation Sequencing datasets including RNAseq, WGS, and Sequence/Target Capture methodologies (e.g., AHE, UCEs).

HPV Pipeline (Human Papilloma Virus) is a bioinformatic pipeline designed to run Next-Generation Sequence reads to identify and genotype HPV infections in human specimens.

Pip package for CRISPR-Cas9 screen analysis

This programme takes advantage of Stacks to analyze NGS data. We have successfully processed NGS data for Brassicacae plants and Triticum aestivum L.

SRSF framework for nucleosome positioning analysis

FASTQ read trimming by the highest scoring path algorithm

A tool for deep statistical analyses and informative visualizations of complex -omic data