Machine Learning on Protein Molecule Sequence

GPU accllerated program for Neighbor-Joining algorithm of Biopython library with PyCUDA

Website contains phylogenetic network of SARS-CoV-2 genomes sampled from across the world. These genomes are closely related and under evolutionary selection in their human hosts The problem is that the usual sites that shows or talks about that topic are complicated for the people who have not studied this kind of materials related to genomics …

Optimization of operations from pairwise2 module in Biopython library

Explorando a biblioteca Biopython

Protein Synthesis Project Using Python, BioPython, and BioSQL

Coursework in bioinformatics class

Script for sorting FASTA sequences by clade in a given tree topology.

This program takes in a .gb file (Genome Bank file) and creates a record with all of the features of the genome to create a Circular Genome Diagram.

Explore the project, where the complete sequence alignment is visually presented. This concise visualization offers a clear understanding of the differences between the reference and delta variant sequences. Dive into this comparative study to gain insights into the genomic variations and evolutionary dynamics of these prominent strains.

Investigating unmapped reads within next generation sequencing data will provide additional information regarding the source of the trace microbial reads.

Bioinformatics Algorithms is a discipline at my university that aims to provide knowledge about manipulating DNA and RNA sequences using Python.

Developed a predictive bioinformatics service which evaluates if the new DNA/RNA strain is virulent or not with testing accuracy 99%. Extra-Tree Classifier ensemble method is used to develop the model and UI is developed with streamlit.io. The service is dockerized and deployed on EC2 instance.