A simple pipeline to test some basic nextflow features.
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Updated
Feb 28, 2021 - Nextflow
A simple pipeline to test some basic nextflow features.
Bayesian phylogenetic analysis
An hello world pipeline to test nextflow installations.
Testing different pipelines using Nextflow
Nextflow pipeline for targeted sequencing data.
My final thesis project work from my Biomedical Genomics MSc undertaken at NUIG, 2021. Includes Nextflow, Snakemake, Bash, Python and R scripts.
Advanced Training in Bioinformatics Workflows: Beginner - Intermediate level Bioinformaticians working with next-generation sequencing data in East-Africa.
A nextflow pipeline for analysis and visualisation of NGS data using FastQC and Python Ploty Dash.
Nextflow pipeline to assemble genomes from nanopore reads.
This workflow for molecular dynamics simulation of proteins
Demultiplexing pipeline for sequencing data
Scripts for ARIBA-based gene detection
Nextflow Scripts/Workflows for Bioinformatics
Atac-Seq pipeline
Working through NextFlow tutorials. See https://github.com/nextflow-io/training
This directory contains material that I've used in different courses
A nextflow workflow to build referenceseeker DBs on the fly
A Genome Annotation workflow for Eukaryotes
Chip-Seq pipeline
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