Proof-of-concept for reasoning over the SemMedDB knowledge base, using miniKanren + heuristics + indexing.

Schema and generated objects for biolink data model and upper ontology

MyGene.info: A BioThings API for gene annotations

KGX is a Python library for exchanging Knowledge Graphs

MyVariant.info: A BioThings API for human variant annotations

A database of paths that represent the mechanism of action from a drug to a disease in an indication.

BioThings API framework - Making high-performance API for biological annotation data

debugging biological networks to reach coherence, completeness and consistency

Integrated OBO ontology store

Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)

Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)

A collection of useful python functions for looking up information and working with the Biolink Model

Intelligent APIs for a more connected web: https://smart-api.info

Extracting gene sets from published pathway figures

MyChem.info: A BioThings API for chemical/drug annotations

BioThings Explorer: a schema-based client for API interoperability

This repo hosts the API metadata for the Translator project

Service that produces Translator compliant nodes given a curie

Babel creates cliques of equivalent identifiers across many biomedical vocabularies.