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43 Open 176 Closed
43 Open 176 Closed
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Issues list

Make more distinction between source and sink options when parsing CLI input bug Something isn't working
#491 opened Apr 15, 2024 by caufieldjh
Support duckdb as alternate sink/source...or more enhancement New feature or request
#482 opened Apr 1, 2024 by caufieldjh
2
KGX support for additional formats enhancement New feature or request
#481 opened Mar 27, 2024 by realmarcin
Undocumented requirements for input nodes/edges file names? bug Something isn't working
#471 opened Oct 25, 2023 by amykglen
KGX merge overwrites "provided_by" property
#463 opened Jul 12, 2023 by stimon
update KGX to optionally provide "retrieval_source_ids" attribute to collect information retrieval properties enhancement New feature or request
#458 opened Jun 22, 2023 by sierra-moxon
log_error in validation scales poorly bug Something isn't working
#440 opened Mar 21, 2023 by kevinschaper
1
kgx validate -o option writes an empty file, output goes to stderr rather than stdout bug Something isn't working
#435 opened Mar 15, 2023 by kevinschaper
2 tasks
Automate mapping of infores in primary_knowledge_source enhancement New feature or request
#430 opened Mar 10, 2023 by caufieldjh
1
1
Option to add un-prefixed labels in neo4j labels enhancement New feature or request
#428 opened Feb 16, 2023 by kevinschaper
neo_sink.py constraints not created in neo4j v5+ bug Something isn't working
#419 opened Nov 30, 2022 by frdougal
Knowledge Graph Exchange (KGE) Archive Download bug Something isn't working
#417 opened Nov 9, 2022 by codewarrior2000
Dynamic configuration of Biolink Model semantics in KGX validation enhancement New feature or request
#416 opened Nov 2, 2022 by RichardBruskiewich
add documentation to the kgx merge doc that shows when to use cat-merge as well as a set of steps to use merge config documentation enhancement New feature or request good first issue Good for newcomers
#414 opened Oct 24, 2022 by sierra-moxon
4 tasks
@sierra-moxon
KGX edge merge does not take into account enough attributes on the edge bug Something isn't working
#413 opened Oct 12, 2022 by sierra-moxon
1
Add ability to "turn off" KGX's prefix mapping functionality enhancement New feature or request
#412 opened Sep 19, 2022 by sierra-moxon
Description of affect of clique_merge on node properties
#394 opened Jun 6, 2022 by frdougal
1
command line option to drop "not" edges enhancement New feature or request good first issue Good for newcomers
#393 opened May 26, 2022 by sierra-moxon
@sierra-moxon
add ability to walk up ontologies to find Biolink-Model mappings enhancement New feature or request
#378 opened Mar 10, 2022 by sierra-moxon
2
Allow user-provided SSSOM maps to be used for prefix prioritization enhancement New feature or request
#369 opened Jan 12, 2022 by caufieldjh
1
Remove legacy Biolink Model fields like 'relation'
#363 opened Nov 27, 2021 by RichardBruskiewich 1.7.0
@sierra-moxon
1
annotation assertion axioms (including subsets/slims) should by default be treated as node properties bug Something isn't working
#358 opened Nov 15, 2021 by cmungall
2
Nodes with single value in multivalued field triggering validation errors bug Something isn't working
#354 opened Nov 2, 2021 by kevinschaper
@RichardBruskiewich
11
KGX dropping terms from OBO ontologies (json -> tsv) with no 'name' attribute enhancement New feature or request
#352 opened Oct 27, 2021 by realmarcin
3
jsonline source module doesn't correctly unpack tar.gz archives containing individual nodes and edges files bug Something isn't working good first issue Good for newcomers
#347 opened Oct 16, 2021 by RichardBruskiewich
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