nanopore
Here are 219 public repositories matching this topic...
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May 16, 2017 - Fortran
Client Serive of ARGpore pipeline for the analysis of antibiotic resistance in nanopore reads
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May 30, 2017 - CSS
Nanopore base caller based on original Chiron adding Dropout and SRU
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Nov 16, 2017 - Python
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Apr 5, 2018 - Python
A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.
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Apr 21, 2018 - Python
Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.
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May 29, 2018 - C++
Pipeline for analysing M. tuberculosis nanopore reads and getting drug susceptibility information.
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Jul 16, 2018 - Python
MinION Open Nucleotide Identifier for Continuous Analysis - an open source pathogen identifier for real-time analysis on MinION output
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Dec 24, 2018 - Python
The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, clusters reads and produces a consensus sequence for each cluster after multiple sequence alignment.
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Feb 27, 2019 - R
Pipeline for hybrid assembly using short and long reads.
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Apr 18, 2019 - Nextflow
Pipeline with GUI for nanopore-sequencing.
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Jul 19, 2019 - Java
Pipeline with GUI for nanopore-sequencing.
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Nov 7, 2019 - Java
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