Toolkit and pipeline for processing short- and long-read RNA sequencing data.
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Updated
Sep 5, 2022 - Jupyter Notebook
Toolkit and pipeline for processing short- and long-read RNA sequencing data.
NGS4ECOPROD - An easy-to-use conda environment and pipelines for metagenome sequence analysis
antibiotic resistance profiling of nanopore reads
Preprocessing of raw reads obtained using ARTIC's protocol for sequencing SARS-CoV-2 genome.
Slides for presentation to the Queensland Mycobacterium Reference Laboratory 24/02/2022
Analysis documentation for part of the reference genome assembly of the humble guinea pig. Oxford Nanopore Technologies (ONT) pore-c data.
Nextflow pipeline to assemble genomes from nanopore reads.
Pipeline for analysing M. tuberculosis nanopore reads and getting drug susceptibility information.
A toolkit to harmonize and filter structural variations across methods and samples.
Target site duplication assessment from alignment file and genomic location of insertion sites.
Real-Time Nanopore Analysis Pipeline: Repository for developing a real-time Nanopore sequencing pipeline to enhance cancer vaccine research. Features include real-time monitoring, sequencing endpoints, and comparative TCR analysis between Singleron and Nanopore technologies.
A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
Pipeline with GUI for nanopore-sequencing.
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