Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
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Updated
May 24, 2024 - R
Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
Pipeline plugins for PALADIN, providing HPC support, abundance (taxonomy, go terms), customized reports, etc
Library to perform metabolic engineering tasks
Infer metabolic directions from moment differences of mass-weighted intensity distributions
A tool for representing genomic potential and transcriptomic expression into KEGG pathways
Go REST API to replace Genbank, Uniprot, Rhea, and CHEMBL
Identifying reprogrammed metabolic routes given omics data.
prepBioCyc: Preprocess BioCyc files
Toolkit for Modelling and Simulation of Gene Expressions and Metabolism
leADS: improved metabolic pathway inference based on active dataset subsampling
CHAP: Modeling Metabolic Pathways as Groups (with Augmentation)
reMap: relabeling metabolic pathway data with groups to improve prediction outcomes
Metabolic pathway inference using non-negative matrix factorization with community detection
Diversity-based enumeration of optimal context-specific metabolic networks
Serves as the backend code for https://www.curatemetabolicpathways.com
Web application of metabolics pathway visualisation, for the Gencovery business (https://gencovery.com/), created during the PDP project during the M1 of the Master of Bioinformatics, in Bordeaux.
A basic network of human metabolism, including key enzymes, intermediates, and hormonal influences
PathVisio plugin to find relevant metabolic reactions from Rhea
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