🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
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Updated
Apr 9, 2024 - R
🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.
Comparison of gene usage in immune repertoires under different biological conditions
Python and R Scripts for Statistical analysis of available immunogobulin variable genes
(Under development) Computational framework for probabilistic models of immune receptor assembling.
The Atlas of Immunoglobulin Repertoires (TheAIR)
Simulation of false tandem substitutions from input sequencing data
Open Source python module to enable batch gold particle picking, filtering, processing & statistical modelling of TEM images produced by IGEM (immunogold electron microscopy).
Construction of IHGV sequences from RNA-seq
A pipeline for preprocessing and annotation of NGS immunoglobulin repertoire data.
ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
IgIDivA (Immunoglobulin Intraclonal Diversification Analysis) is a purpose-built tool for the analysis of the intraclonal diversification process using high-throughput sequencing data. It is written in shiny R.
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