🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
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Updated
Apr 9, 2024 - R
🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
Statistical classifier for immune repertoires
CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offering functionalities for downstream analysis of clustering results.
🦠 Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencing) data of COVID-19 patients with SARS-CoV-2.
[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.
Comparison of Adaptive Immune Receptor Repertoires
Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.
An R package to analyze single-cell V(D)J data
PepTools - An Immunoinformatics (Immunological Bioinformatics) R-package for working with peptide data
Fast string distance computation in Python
🐶 hlabud: HLA genotype analysis in R
WES HLA Typing based on multiple alternative tools
Incredible Deep Learning in immunooncology with Pytorch - workshop at AIRR Community Meeting IV
Comparison of gene usage in immune repertoires under different biological conditions
LZ76 Graphs and Applications in Immunology
A pythonic library for analysing immunopeptidomic experiments
Standardise TR/MH data
Python SDK for Immune Epitope Database (IEDB) Analysis Tools API
Slides for presentations by ImmunoMind team
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