RADseq Data Exploration, Manipulation and Visualization using R
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Updated
May 15, 2024 - HTML
RADseq Data Exploration, Manipulation and Visualization using R
PopGenHelpR is an R package that estimates commonly used population genomic statistics and generates publication quality figures.
A tool to extract LOH blocks from VCF, BAM and FASTA data
Quantitative and population genetics analyses of populations, pools, half-sib/full-sib families, and polyploids
Bioinformatic R/Rmd-code for scientific paper published in BMC Genomics
A command-line parser for VCF files designed for population genetics analyses.
Archived code for analyses in "Genomic signatures of divergent ecological strategies in a recent radiation of Neotropical wild cats" (Ramirez et al. 2022, MBE)
Compare and shuffle heterozygosity using BED and VCF files
GWAS Pre-Processing Pipeline
heterPlotter package can plot heterozygosity information of hapmap(female and F1) files and pvalue information you use the same hapmap file to calculate GWAS, besides it can also draw the relative gene feature on the top of the plot
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