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Apr 2, 2020 - Jupyter Notebook
gene-regulatory-networks
Here are 19 public repositories matching this topic...
Supplemental material associated with ALife 2020 conference submission.
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Jun 3, 2020 - HTML
An explainable inductive learning model on gene regulatory and toxicogenomic knowledge graph (under development...)
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Aug 5, 2020 - Jupyter Notebook
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Jun 17, 2021 - Python
Automated analysis tool for mutations in promoters, transcription factor binding sites, coding regions and protein domains in the context of gene regulatory networks.
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Sep 7, 2021 - Python
Python Code to extract gene regulatory Information and create Boolean functions from PDFs using OCR and NLP, realized as a Django Website.
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Dec 15, 2021 - CSS
TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
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Feb 22, 2022 - R
Source code for the paper "Fast and Accurate Inference of Gene Regulatory Networks through Robust Precision Matrix Estimation", by Passemiers et al.
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Mar 21, 2022 - Python
A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data
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Aug 2, 2022 - R
R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)
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Sep 12, 2022 - R
Python package for estimating GRNs with Bayesian networks.
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Nov 20, 2022 - Python
Single-cell Transcriptome and Regulome Analysis Pipeline
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Mar 6, 2023 - C
Gene regulatory network reconstruction using random forest regression from only gene expression data from Single Cell RNA Seq Data. This project consisted of feature importance extraction and exploring different methods to investigate different and unique ways to extract feature importance to construct a gene regulatory network.
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Dec 17, 2023 - Jupyter Notebook
Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
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Jan 18, 2024 - Jupyter Notebook
A Nextflow pipeline demonstrating how to train graph neural networks for gene regulatory network reconstruction using DREAM5 data.
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Apr 2, 2024 - Python
Depicting pseudotime-lagged causality for accurate gene-regulatory inference
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Apr 15, 2024 - Python
Protein Graph Library
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May 3, 2024 - Jupyter Notebook
Simulation and inference of gene regulatory networks based on transcriptional bursting
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May 16, 2024 - Python
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