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28 Open 76 Closed
28 Open 76 Closed
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Issues list

Script for Generating Gene bed files
#168 opened Nov 16, 2023 by htong3031
Error - overlapping regions in bedGraph line
#167 opened Nov 1, 2023 by Chenjunjie1996
ImportError: cannot import name typeDict
#166 opened Apr 26, 2023 by KunFang93
4
Obtaining 10X PBMC RNA and ATAC data from 2 different donors with annotations
#164 opened Mar 1, 2023 by jules-samaran
Support for Trimodal data analysis (TEA seq, DOGMA seq)
#163 opened Feb 28, 2023 by bioarpit1
whitelist and input barcode lengths are not equal
#162 opened Jan 13, 2023 by Bo-UT
1
ATACRunSeurat..RunSVD->RunSVD.Assay->RunSVD.default->irlba
#159 opened Sep 20, 2022 by njohnso6
1
The problem of ATACCalculateGenescore
#156 opened Jul 8, 2022 by yuxuanChen777
therer the no argument for --frag
#155 opened Jul 3, 2022 by wxl123wxl
Error when running 'macs2 callpeak..'
#154 opened Feb 26, 2022 by loraince
chromap — Illegal instruction (core dumped)
#153 opened Feb 8, 2022 by kOoLiNuS
3
Chromap, Less than 5% barcodes can be found or corrected based on the barcode whitelist
#152 opened Jan 8, 2022 by genecell
1
Download of giggle index from Cistrome website: 404 Not Found
#151 opened Dec 28, 2021 by Telogen
Error with snATAC peakcall: ZeroDivisionError
#150 opened Dec 22, 2021 by itsyogeshd
question about Chromium Single Cell Multiome ATAC + Gene Expression
#148 opened Oct 27, 2021 by mabelwang21
2
Please provide tutorials for Smartseq2
#146 opened Aug 14, 2021 by Junjie-Hu
Chromap Error with MAESTRO 1.5.0
#143 opened Jul 8, 2021 by LunaP-831
2
supported species
#140 opened Jun 21, 2021 by pengxin2019
10
Input seurat integration object
#135 opened Jun 1, 2021 by mudappathir
1
Species Type question Further information is requested
#112 opened Feb 2, 2021 by Jaureguy760
5
Does enhanced RP gene score drop peaks in exons/promoter regions of multiple genes? question Further information is requested
#107 opened Jan 21, 2021 by mengxiao
3
error with ATACCalculateGenescore
#102 opened Jan 13, 2021 by hoondy
2
gene_peak matrix in RP_model
#93 opened Dec 21, 2020 by wxy-omg
3
genedistance is not used in calculating RP bug Something isn't working
#85 opened Dec 9, 2020 by crazyhottommy
Pass in existing Seurat/SingleCellExperiment Object enhancement New feature or request
#77 opened Nov 13, 2020 by bc2zb
2
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