RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
-
Updated
May 23, 2024 - Python
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
A python package for working with inputs to and outputs from the toil-rnaseq pipeline
Genomic Analysis Pipeline: Automate data preprocessing, variant calling, and annotation with Snakemake. Ensure reproducibility and reliability in genomic studies.
A script that efficiently processes multiple '.fastq' files, automatically organizing the pre-trimmed output into a folder named 'qc_reports_pretrim' for streamlined quality control and sequence data analysis.
A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
Walks through installation and usage of FASTQC, MultiQC, Trimmomatic, and Salmon for transcriptomic data preprocessing. Includes Grid Engine shell scripts that can be looped over many files in a directory.
Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
Bulk Rna-seq Analysis
A quality control tool for FASTQ files written in rust
A workflow automation script: demultiplex the library sequence, run quality checks, deliver to archiving and processing afterwards
A nextflow pipeline for analysis and visualisation of NGS data using FastQC and Python Ploty Dash.
A Snakemake workflow for quality control assessment of Illumina NGS data using FastQC and MultiQC
An interactive web tool for quality control of DNA sequencing data
Build Docker container for FastQC software and (optionally) convert to Apptainer/Singularity.
A simple fastp-MultiQC nextflow pipeline
The repository contain directories of projects done during the bioinformatics degree program
Add a description, image, and links to the fastqc topic page so that developers can more easily learn about it.
To associate your repository with the fastqc topic, visit your repo's landing page and select "manage topics."