A Go package for engineering organisms.
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Updated
Apr 30, 2024 - Go
A Go package for engineering organisms.
A Go package for designing DNA.
This bartender version could handle arbitrary length of barcode
Jupyter notebooks for BFG-PCA related simulation and analysis.
Barcode Generator
bistro: barcode distribution
DNA barcoding analysis pipeline
Artifact repository for the paper "Scalable Classification of Organisms into a Taxonomy Using Hierarchical Supervised Learners", Journal of Bioinformatics and Computational Biology, 18(05), 2050026. doi:10.1142/S0219720020500262
Jupyter notebooks for BFG-PCA related simulation and analysis.
Repository containing a python script for barcode gap plotting, as well as an example input-file for the script.
FISHprobe: DNA Probe Design Pipeline
Scripts for executing a filtering, clustering and identification pipeline for eDNA samples.
Extract ITS and Neighboring Regions from Eukaryotic DNA Sequences
A MATLAB suite implementing computer vision pipeline to extract information from the noisy TIRF microscopy data (image stack)
Official GitHub repository for the R package "Species Identity and Evolution in R" (spider)
Arctic Community Similarity using DNA Barcoding Data
Code and data used for analysis and estimation of invertebrate biodiversity on a temperate forested island (Hauturu) based on DNA barcodes and soil DNA metabarcoding data.
Map plotting with Plotly using public BOLD API COI data
Linking BOLD sequences to specimens in GBIF
DNA BARCODE Statistics : Number of GBIF BOLD entries 2014-11-27
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