Comparison of Dimensionality Reduction Techniques in CytoExploreR
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Updated
Apr 24, 2020
Comparison of Dimensionality Reduction Techniques in CytoExploreR
Autogating for gate 1 and gate 2 with U-Net.
The equivalent circuit model for a parallel electrode impedance cytometer is analyzed together with Maxwell's theory of homogenization of mixtures. It deals with both a modeling single and double shell.
Work done during rotation with Coleen McNamara & Stefan Bekiranov in UVA BIMS PhD program
A meta-package to test pipelines of image processing tools and cytometry-style calibration.
Google Colab interface to HDStIM (High Dimensional Stimulation Immune Mapping)
Official implementation of GateNet
R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data
R scripts to help with your flow cytometry analysis. Batch index export and overlays
PICAFlow: a complete R workflow dedicated to flow/mass cytometry data, from data pre-processing to deep and comprehensive analysis.
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