The recommended method is to use pipenv to install this project and its dependencies into a clean environment. This project uses a fork of cytoflow which may collide with an installation of upstream cytoflow elsewhere.
$ pipenv install
If you use pipenv as above, the following will be installed for you in a local environment:
- microtaspy, an image processing pipeline
- cytoflow-microscopy, a cytoflow fork that supports DataFrame input
$ pipenv shell $ python -m unittest