Analyze two-component nanoparticle properties for classical molecular dynamics simulations
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Updated
Oct 24, 2022 - Python
Analyze two-component nanoparticle properties for classical molecular dynamics simulations
Simulating tumour development in two and three dimensions using the framework of the spatial Tangled Nature model
Force field parameters and supplementary scripts for the "A coarse-grained model for DNA origami" paper by R. Reshetnikov, A. Stolyarova, A. Zalevsky et. al.
Files required for our tutorial on PEGylated proteins
This repo consists of Monte Carlo C++ codes used to run coarse-grained simulations for biopolymers like DNA.
A toolkit for working with coarse-grain systems
Molecular simulator for proteins that uses Go-type potentials
Tutorial examples for HylleraasMD
Molecular Dynamics Trajectory Analysis Tools
COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3
Object-Oriented Perl 5, Moose Library for Molecular Hacking
Massively parallel hybrid particle-field molecular dynamics (hPF-MD) simulation method in Julia
Generate and perturb protein structural ensembles using the ExProSE algorithm
Massively parallel hybrid particle-field molecular dynamics in Python.
⚡ general purpose coarse-grained molecular dynamics simulation package
Swarm-CG: Automatic Parametrization of Bonded Terms in MARTINI-based Coarse-Grained Models of Simple to Complex Molecules via Fuzzy Self-Tuning Particle Swarm Optimization
Differentiable molecular simulation of proteins with a coarse-grained potential
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