blastn
Here are 32 public repositories matching this topic...
DNA barcoding analysis pipeline
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Jul 20, 2023 - Python
The impact of transitive annotation on the training of taxonomic classifiers
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Mar 23, 2024 - Jupyter Notebook
various tools that help with deep sequencing analysis
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Oct 26, 2023 - Python
This repository conatins bash scripts for performing a blast search using a custom database of BOLA-DRB3 alleles that were sequenced using Sanger sequencing.
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Dec 20, 2023
Scripts to run benchmarks of BLAST and PLAST on a supercomputer
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Jan 30, 2018 - Shell
Container for blastn and Jupyter notebook
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Jun 4, 2019 - Shell
How to automatically download blastn database, run blastn, and extract blastn hit sequences?
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Apr 17, 2024 - Shell
A typesafe Scala BLAST API
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Oct 19, 2017 - Scala
BLAST without Sys.Call()
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Aug 10, 2023 - C++
Demo of blastn tool for bioinformatics
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Jun 17, 2019 - Jupyter Notebook
Parser of BLAST results
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Aug 5, 2023 - Python
omicR for R studio creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data) and long-read sequences (Illumina, PacBio… etc). You can use refer…
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May 7, 2021 - Python
This is a simple implementation of NCBI's BLAST(Basic Local Alignment Search Tool) url API in PHP. Blast finds regions of similarity between biological sequences.
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Jul 12, 2017 - PHP
omicR It creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data) and long-read sequences (Illumina, PacBio… etc).
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May 7, 2021 - Python
A beginner’s guide to Bioinformatics
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Mar 2, 2023
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