Similarity networks of biosynthetic gene clusters
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Updated
May 27, 2024 - JavaScript
Similarity networks of biosynthetic gene clusters
BGC Detection and Classification Using Deep Learning
(Meta-)genome screening for functional and natural product gene sequences
Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
GEne Cluster prediction with COnditional random fields.
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
The Functional Order (FunOrder) tool - Identification of essential biosynthetic genes through computational molecular co-evolution – novel tool that allows automated identification of essential genes in a biosynthetic gene clusters (BGC) based solely on genomic data
Methods and classes to support Biosynthetic Gene Cluster analysis
Repository for data, code & figures related to the publication: "Natural products from reconstructed bacterial genomes of the Middle and Upper Paleolithic"
codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the full genome.
An R shinny app for Substructure Search in MIBiG database.
This repo is for the scripts used in preparation of Flongle Actinomycetes paper
Case studies of reproducibility in bioinformatics: Metabolomics
💎 Resources of Biosynthetic Gene Clusters related databases and tools.
biosynthetic-gene-clusters toolkit
ALL-BGCs: An Integrated Pipeline for Metagenome Mining for Biosynthetic Gene Clusters
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