Ribo-seq focused Oligo Design pipeline for experiment-specific Depletion of Ribosomal RNAs
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Updated
Jan 27, 2023 - Python
Ribo-seq focused Oligo Design pipeline for experiment-specific Depletion of Ribosomal RNAs
A novel bioinformatics tool in Java to build phased long alleles of STR+SNP+InDel from VCF file
Sequence Alignment tool
A pipeline for quick and dirty QC of your small RNA-seq libraries focused on piRNA.
A curated list of awesome Bioinformatics tools.
This program performs pairwise sequence alignment between two DNA/protein sequences and provides a similarity score.
DNA toolkit package for easier analysis
A python software to parse AlphaFold/ColabFold results into PyMOL PSE and PAE plots.
Quadtree - gradient-boosted decision tree model used to predict guanine quadruplexes in DNA sequences
R toolkit designed to enhance the process of cleaning up and visualizing clusters within a Seurat object, commonly used for scRNA-seq data analysis.
fqtk: A toolkit to perform common tasks on FASTQ reads. Rename FASTQ identifiers, print FASTQ statistics and convert FASTQ to FASTA. This program is written in AWK and Bash.
The official python version of ImGQfinder: http://imgqfinder.niifhm.ru/ A tool that finds gquadruplexes and imotifs.
EasyModel: a user-friendly web-based interface based on MODELLER
A general 16S rDNA sequencing analysis pipeline
Fast and Accurate Approach of Structural Variations Detection for Short DNA fragments
A workflow automation script: demultiplex the library sequence, run quality checks, deliver to archiving and processing afterwards
A kernel-based distance calculator for protein sequences.
Build highly accurate transcripts from long-read RNA data
An implementation of modified K-Means clustering on Biological Data (Proteins).
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