just a draft. Bioinformatics Projects
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Updated
May 25, 2020
just a draft. Bioinformatics Projects
Alineamiento bioinformático global de pares de secuencias utilizando algoritmo Needleman-Wunsch y backtracking.
Bioinformatics Algorithms is a discipline at my university that aims to provide knowledge about manipulating DNA and RNA sequences using Python.
To identify the lowest (relatively) energy docking sites for a particular ligand using one-dimensional search.
This program calculates the conservation index of a set of DNA or protein sequences
An old Phylogenetik Project (2007) in JAVA, with (some) phylogeny, bioinformatics algorithms, matrix implementations and comparisons, PAM and BLOSUM (extract from http://gabriel.chandesris.free.fr/projets/Phylogenetik/ )
The algorithms implemented in the extent of CENG 4217 Bioinformatics Algorithms course.
linear regression based on sequence features
My solutions for the project of "An Intro to Bioinformatics" - Sharif University of Technology (SUT) - Prof. Somayyeh Koohi and Prof. Ali Sharifi-Zarchi - Fall 2021(1400-1).
Source for Cleverly Titled Blog
coding problems from course 5 of the Bioinformatics specialization
Hidden Messages uses Motif Discovery, Laplace's Law of Succession, and Gibbs Sampling to identify recognisable DNA sequences within small microbial genomes, such as the oriC of E. coli.
stitching coding regions from exon alignments for the protein to genome alignments.
Contains solutions to problems posted on rosalind.info
Implementação do algoritmo needleman wunsch em Python
Algorithms for the generation of substitution matrices from intra-taxa variation data. Implemented and published on human genetic variation data.
Motif Search and Sequence Alingment Algorithms
HNOXPred: a web tool for the prediction of gas sensing H-NOX proteins from amino acid sequence
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