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Scialdone Lab

Popular repositories

  1. CIARA CIARA Public

    CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential markers of rare cell types looking at genes whose expression is…

    R 15 2

  2. COMUNET COMUNET Public template

    COMUNET: a tool to explore and visualize intercellular communication

    Jupyter Notebook 12 10

  3. CIARA_python CIARA_python Public

    Implementation of entropy of mixing algorithm in python

    Jupyter Notebook 7 1

  4. GRANpy GRANpy Public

    Forked from tkipf/gae

    Graph Auto-Encoders (GAE) for Gene Regulatory Network (GRN) completion using scRNA-Seq datasets

    Python 2 2

  5. MitoHEAR MitoHEAR Public

    MitoHEAR (Mitochondrial HEteroplasmy AnalyzeR) is an R package that allows the estimation as well as downstream statistical analysis of the mtDNA heteroplasmy calculated from single-cell datasets.

    R 2 3

  6. human-gastrula-shiny human-gastrula-shiny Public

    R 2

Repositories

Showing 10 of 18 repositories
  • STREAMLINE Public

    STREAMLINE (Topological benchmarking of GRN inference from scRNA-Sequencing data)

    HTML 2 0 0 0 Updated Apr 12, 2024
  • scAVE Public
    Jupyter Notebook 0 1 0 0 Updated Mar 18, 2024
  • Reprogramming-cell-fate---Ding-Yang Public

    The code and data that used in the intern. The aim of the internship is to find whether the boundaries in blastula cells change after nucleus transfer.

    0 0 0 0 Updated Nov 9, 2023
  • MATACseq Public
    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 18, 2023
  • CIARA Public

    CIARA (Cluster Independent Algorithm for the identification of markers of RAre cell types) is an R package that identifies potential markers of rare cell types looking at genes whose expression is confined in small regions of the expression space

    R 15 2 1 0 Updated May 23, 2023
  • human-gastrula-shiny Public
    R 2 0 2 0 Updated Apr 3, 2023
  • CIARA_python Public

    Implementation of entropy of mixing algorithm in python

    Jupyter Notebook 7 MIT 1 0 0 Updated Oct 19, 2022
  • WOTPLY Public
    R 1 1 0 0 Updated Oct 6, 2022
  • 2DLEGI Public

    Impact of size and geometry of 2D epithelial tissues on the precision of gradient sensing via nearest-neighbour or long-range intercellular communication

    Jupyter Notebook 1 0 0 0 Updated Jun 29, 2022
  • MitoHEAR Public

    MitoHEAR (Mitochondrial HEteroplasmy AnalyzeR) is an R package that allows the estimation as well as downstream statistical analysis of the mtDNA heteroplasmy calculated from single-cell datasets.

    R 2 GPL-3.0 3 0 0 Updated Jun 2, 2022
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