Pinned

1. nf-core/circrna nf-core/circrna Public

   circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data

   Nextflow 40 18

2. nf-core/tfactivity nf-core/tfactivity Public

   Bioinformatics pipeline that makes use of expression and open chromatin data to identify differentially active transcription factors across conditions.

   Nextflow 7

3. Mye-InfoBank/SIMBA Mye-InfoBank/SIMBA Public

   A nextflow pipeline for processing sc-RNASeq data, performing QC and integration and preparing the results for further investigation using cellxgene.

   Nextflow 7

4. Mye-InfoBank/SIMBA-QC Mye-InfoBank/SIMBA-QC Public

   This repository contains the source code of the python shiny app which is recommended to be used for the quality control of the SIMBA🦁 pipeline.

   Python

5. biomedbigdata/TF-Prioritizer biomedbigdata/TF-Prioritizer Public

   Bioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data

   Java 12

6. algobio algobio Public

   This project aims on making the algorithms covered in the corresponding lecture at LMU Munich easier to understand by providing step-by-step logging and result visualization.

   Python 7 1