⚡ ♒ Rapid prokaryotic genome annotation
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Updated
Apr 10, 2024 - Perl
⚡ ♒ Rapid prokaryotic genome annotation
A flexible pipeline for complete analysis of bacterial genomes
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Simple bacterial assembly and annotation pipeline
Bioinformatics tool to find integrons in bacterial genomes
The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.
CGView is a Java package for generating high-quality, zoomable maps of circular genomes.
Machine-learning-based general bacterial promoter prediction tool.
Combining de novo and reference-guided assembly with Scaffold_builder
Fast k-mer based tool for multi locus sequence typing (MLST)
SNP and variant calling pipeline for bacteria
📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria
High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers
genome sized sequences clustering
R package to perform data pre-processing for more informative bacterial GWAS
Tool intended to pull out sequences and annotations between insertion sites specified by the user.
In silico multi-locus sequence typing (MLST) for bacterial genomes
Bioinformatics pipeline for nanopore sequencing data
Genomic neighbor typing of bacterial pathogens using MinHash 🐀
Various scripts for efficient processing of 10k Salmonella genomes
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