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Issues: bactopia/bactopia

2024 Bactopia Usage Survey
#499 opened Mar 25, 2024 by rpetit3
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Bactopia Roadmap and TODOs
#356 opened Sep 22, 2022 by rpetit3
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Issues list

One file from Gubbins output is missing bug Something isn't working fixed
#510 opened Apr 25, 2024 by andreaniml
4
Summary can't find the samples bug Something isn't working fixed
#509 opened Apr 20, 2024 by andreaniml
14
Use local downloaded models for medaka in dragonflye module [feature] enhancement New feature or request
#506 opened Apr 15, 2024 by jenmuell
1 of 2 tasks
2
Module installation fixed question Further information is requested
#505 opened Apr 11, 2024 by aida-god92
4
Staphtyper module compilation error fixed question Further information is requested
#503 opened Apr 8, 2024 by Kiratrea
2
[bug] bactopia tools depend on uninstallable bioperl-1.7.2 bug Something isn't working fixed
#502 opened Apr 5, 2024 by pvanheus
15
[bug] cleanyerreads workflow fails in bactopia 3.0.1 bug Something isn't working fixed
#501 opened Apr 3, 2024 by pvanheus
1
[bug] RuntimeError from Gubbins via Singularity in Snippy subworkflow bug Something isn't working
#500 opened Mar 28, 2024 by pcrxn
3
2024 Bactopia Usage Survey
#499 opened Mar 25, 2024 by rpetit3
[bug]Process BACTOPIA:ASSEMBLER:ASSEMBLER_MODULE (reads) terminated with an error exit status (1) bug Something isn't working fixed
#496 opened Mar 23, 2024 by happymanmohit
15
Bactopia-tools eggnog - decorate_gff option question Further information is requested
#495 opened Mar 18, 2024 by steven-bioinfo
2
[bug] Poor quality / unmappeable samples cause snippy-core to fail with a confusing erorr message bug Something isn't working
#494 opened Mar 15, 2024 by pvanheus
[bug] (or user error) kraken2 db not found bug Something isn't working
#492 opened Mar 5, 2024 by incoherentian
1
[feature] Full AMRFinderPlus search combining results to get maximum information enhancement New feature or request fixed
#487 opened Feb 21, 2024 by llk578496
2 tasks done
2
[feature] improve docs - add required parameters to doc site enhancement New feature or request
#483 opened Feb 15, 2024 by rpetit3
2 tasks
[feature] it should be easier to extract gene/protein alignments enhancement New feature or request
#482 opened Feb 14, 2024 by rpetit3
2 tasks
1
[feature request] - add assembly accession support to bactopia search enhancement New feature or request question Further information is requested
#476 opened Feb 1, 2024 by tfischer78
6
[question] mapping directory question Further information is requested
#464 opened Nov 16, 2023 by Svnipni
7
[question] limit memory kraken2 question Further information is requested
#458 opened Oct 5, 2023 by egenomics
5
Apple silicon M2 question Further information is requested
#447 opened Sep 16, 2023 by mabouelk
5
[question] use of max_genome_size? question Further information is requested
#441 opened Sep 11, 2023 by Svnipni
4
[question] question Further information is requested
#435 opened Aug 30, 2023 by Kokejuli
1
multiple ont reads for one sample-how to prepare --sample file[question] question Further information is requested
#420 opened Jun 8, 2023 by kusandeep
7
[question] Can I run ariba tool with all databases in one go? question Further information is requested
#414 opened May 18, 2023 by shigdon
1
[question] Polishing steps. question Further information is requested
#370 opened Nov 18, 2022 by lfenske-93
3
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