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@bactopia

Bactopia

Nextflow DSL2 pipeline for the complete analysis of bacterial genomes

Popular repositories

  1. bactopia bactopia Public

    A flexible pipeline for complete analysis of bacterial genomes

    Nextflow 355 59

  2. bactopia-py bactopia-py Public

    A Python package for working with Bactopia

    Python 5

  3. bactopia-tests bactopia-tests Public

    Contains data used by Bactopia for testing.

    Standard ML 4 1

  4. bactopia-assembler bactopia-assembler Public

    The assembly process used by Bactopia.

    Shell 3

  5. bactopia.github.io bactopia.github.io Public

    Bactopia Documentation

    Jinja 2 8

  6. bactopia-workshop bactopia-workshop Public

    A workshop on getting started with Bactopia

    2 1

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