SNP and variant calling pipeline for bacteria
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Updated
Feb 26, 2018
SNP and variant calling pipeline for bacteria
In silico multi-locus sequence typing (MLST) for bacterial genomes
SNP calling pipeline using mccortex
Python package to create line drawings of genomic comparison 'webs'/'hive plots'
Bioinformatics pipeline for nanopore sequencing data
Simple bacterial assembly and annotation pipeline
Insert genes into genomes to aid synthetic test data generation
Mapping, snps calling, phylogeny
🍣 🦐 A lightweight nucleotide bacterial ortholog clustering tool
Identification of putative duplicated genes among bacterial genomes
Fast k-mer based tool for multi locus sequence typing (MLST)
a genome alignment library built around seed-and-extend algorithms for maximal exact and unique matches
command-line interface software for genome alignment
Reproducible scripts for the Su et al (2020) paper.
genome sized sequences clustering
Bacterial phenotype prediction from low pass sequencing using recommender systems and machine learning classifiers.
A companion application for analyzing and viewing BTyper output files in aggregate
📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria
Various scripts for efficient processing of 10k Salmonella genomes
The following is a bioinformatic workflow designed to find related phages and phage remnants. The workflow is not restricted to phages by any phage database.
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