injecta

Insert genes into genomes to aid synthetic test data generation

Introduction

When testing software that incorporates some form of gene or sequence detection it is desirable to generate synthetic data with known ground truth.

Quick Start

% injecta --version
injecta 0.1.2

Installation

Conda

Install Conda or Miniconda:

conda install -c conda-forge -c bioconda -c defaults injecta # COMING SOON

Homebrew

Install HomeBrew (Mac OS X) or LinuxBrew (Linux).

brew install brewsci/bio/injecta # COMING SOON

Source

This will install the latest version direct from Github. You'll need to add the injecta bin directory to your $PATH, and also ensure all the dependencies are installed.

cd $HOME
git clone https://github.com/tseemann/injecta.git
$HOME/injecta/bin/injecta --help

Dependencies

• perl >= 5.26

License

injecta is free software, released under the GPL 3.0.

Issues

Please submit suggestions and bug reports to the Issue Tracker

Author

Torsten Seemann