A Django Web Application for Bacteria Colony Count and Species Classification
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Updated
Dec 8, 2022 - CSS
A Django Web Application for Bacteria Colony Count and Species Classification
🌱 Designing CRISPRi experiments in bacteria
SNP calling pipeline using mccortex
PowerBacGWAS: Power calculations for Bacterial GWAS
Data and analysis for the DciA evolution manuscript | StallingsLab & JRaviLab
Wonderful O-antigens Operons Finder
bacterial strain identification
shovill批量执行脚本 Batch Shovill can help you execute shovill batch assemblies.
python code which i coded using the mathematical expression for the genome based ontologies annotation and the phylogenomics informativeness
Solutions for day-to-day computational problems in biological and health sciences.
A faster implementation of the string search for the check of the insertion elements and the CRISPR sites if present in the genome string and then clip those insertion sites and get a clean genome.
a workflow for complete analysis of bacterial metagenomes and pagenome graphs and direct viewing in panchae. It will also analyze metagenomes from both illumina and long reads
The code behind my personal blog. Originally a fork of https://github.com/hydecorp/hydejack-starter-kit
Insert genes into genomes to aid synthetic test data generation
Workflow designed for Download, QC, Assemble, Variant calling, and Annotate bacterial WGS in batch
Analyzes the GC skew of bacterial chromosomes using multiple calculations. Outputs a data frame of GC skew values and wiggle files for visualization.
Snakemake workflow for processing Mycobacterium leprae whole genome sequencing data
Accompanying information to a scientific publication on the assembly of bacterial genomes using Illumina and nanopore sequencing data using Unicylcer.
This repository contains a datascience based faster implementation of the domain predictions from the interpro scan and it will give you a complete domains information, coordinates and other associative information. I used a mapping dataframe approach to make it faster rather than looping it over and over.
command-line interface software for genome alignment
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