Repository containing lists of all published ancient metagenomic (and related) samples and libraries
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Updated
May 7, 2024 - HTML
Repository containing lists of all published ancient metagenomic (and related) samples and libraries
🌊 Robust workflows for gathering data about your local ocean.
Snakemake based framework for NGS data analysis and management
En este repositorio se presenta un código de R para poder hacer un análisis de datos Metagenómicos a partir de datos arrojados por un análisis taxonómico del programa KRAKEN 2
a workflow for complete analysis of bacterial metagenomes and pagenome graphs and direct viewing in panchae. It will also analyze metagenomes from both illumina and long reads
Web portal and API for the Curated Metagenomics Data project
This repository provides the scripts used to analyze the metagenomics data from the paper Nicotinamide Riboside-Conditioned Microbiota Deflects High-Fat Diet-Induced Weight Gain in Mice.
Jacobs Lab UCLA : Preprocess shotgun metagenomics data on the UCLA supercomputer
This is a python package for analysis of metagenomics data.
a shell plotting function that extends a ruby framework and plots the metagenomics abundances right in your shell for checking the abundance distribution
An automated pipeline for metagenomic assembly and gene annotation
A simplified version of Kraken, ideal for learning metagenomic analysis. Explore taxonomic classification of DNA sequences and gain insights into microbial communities with this user-friendly educational tool. Perfect for beginners seeking to understand the fundamentals of metagenomics.
I coded this function to estimate the fraction of the ITS predictions from the fungal metagenomics and it estimates by taking into account the sequence length and also the ITS1 and ITS2 start and stop coordinates. Provided a keyworded argument, it estimates the coverage accordingly
Building a pipeline for automated 16S analysis from paired short-reads or long-reads
a metagenomics abundance normalizer which will take the abundance OTUs file and gives you a normalized ratio for plotting of the species
This repository contains code for generating an interactive sunburst graphic for metagenomic analysis.
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