archaea
Here are 17 public repositories matching this topic...
A spin on the Tele* scripts, this time processing and comparing protein sequence input against those of Halobacterium genus
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May 12, 2021 - Shell
This is a microbial amplicon sequence (16S and 18S iTag) data and analyses pipeline corresponding to the manuscript, "Community ecology across bacteria, archaea and microbial eukaryotes in the sediment and seawater of coastal Puerto Nuevo, Baja California" for public benefit and usage.
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Jul 20, 2019
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Apr 30, 2021
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Jan 24, 2019 - R
A library to get information on organisms and UniProt identifiers. This includes growth temperature, growth ph, pfam domains, taxonomic lineage.
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Feb 9, 2021 - Python
*Cerna-Vargas J-P., *Gumerov V.M., Krell T., Zhulin I.B. (2023) Amine recognizing domain in diverse receptors from bacteria and archaea evolved from the universal amino acid sensor. PNAS, 120, e2305837120
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Mar 24, 2023
Methanoperedens nitroreducens genome-scale metabolic model.
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Feb 8, 2022 - Jupyter Notebook
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Apr 20, 2023 - R
Design clade-specific primers targeting a pan-genome core gene
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Oct 10, 2022 - Jupyter Notebook
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Aug 9, 2022 - Python
V. M. Gumerov, E. P. Andrianova, M. A. Matilla, Karen M. Page, Elizabet Monteagudo-Cascales, A. C. Dolphin, T. Krell, I. B. Zhulin (2022). Amino acid sensor conserved from bacteria to humans.
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Jul 25, 2023 - Python
A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
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Sep 30, 2020 - Python
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
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May 17, 2024 - Python
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